Dr. Jorge Rodrigues - Publications

Jesus, EC, E Susilawati, S Smith, Q Wang, B Chai, R Farris, JLM Rodrigues, K Telen, JM Tiedje. 2010. Bacterial communities in the rhizosphere of biofuel crops. Biofuel Res. 3:20-27.

Kielak, A, JLM Rodrigues, EE Kuramae, PSG Chain, JA van Veen, GA Kowalchuk. 2009. Phylogenetic and metagenomic analysis of Verrucomicrobia in former agricultural grassland soil. FEMS Microbiol. Ecol. 71:23-33.

Konstantinidis*, KT, MH Serres*, M Romine*, JLM Rodrigues*, L-A McCue, MS Lipton, A Obraztsova, CS Giometti, KH Nealson, JF Fredrikson, JM Tiedje. 2009. Comparative systems biology across an evolutionary gradient within the Shewanella genus. Proc. Acad. Nat. Sci. U.S.A. 106:15909-15914. *First 4 authors with equal contribution.

Sul WJ, J Park, JF Quensen III, JLM Rodrigues, L Seliger, TV Tsoi, GJ Zylstra, JM Tiedje. 2009. Novel biphenyl dioxygenase subunits retrieved from River Raisin sediment using stable isotope probing-derived metagenomic libraries. Appl. Environ. Microbiol. 75:5501-5506.

Silva-Stenico ME, FTH Pacheco, ER Pereira-Filho, JLM Rodrigues, AN Souza, A Etchegaray, JE Gomes, SM Tsai. 2009. Nutritional deficiency in citrus with symptoms of citrus variegated chlorosis disease. Braz. J. Biol. 69:631-637.

Fredrickson, JK, MF Romine, AS Believ, JM Auchtung, ME Driscoll, TS Gardner, KH Nealson, AL Osterman, G Pinchuk, JL Reed, DA Rodionov, JLM Rodrigues, DA Saffarini, MH Serres, AM Spormann, IB Zhulin, and JM Tiedje. 2008. Towards environmental systems biology of Shewanella. Nature Microbiol. Reviews. 6:592-603.

Rodrigues JLM, MA Duffy, AJ Tesser, D Ebert, L Mouton, and TM Schmidt. 2008. Phylogenetic characterization and prevalence of Spirobacillus cienkowskii: a red-pigmented, spiral-shaped bacterial pathogen of the freshwater Daphnia species. Appl. Environ. Microbiol. 74:1575-1582.

Leigh MB, VH Pellizari, O Uhlik, R Sutka, JLM Rodrigues, NE Ostrom, J Zhou, JM Tiedje. 2007. Biphenl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs). The ISME Journal 1:134-148.

Rodrigues JLM, CA Kachel, MR Aiello, JF Quensen III, OV Maltseva, TV Tsoi, JM Tiedje. 2006. Degradation of Aroclor 1242 dechlorination products in sediments by Burkholderia xenovorans LB400(ohb) and Rhodococcus sp. RHA1(fcb). Appl. Environ. Microbiol. 72:2476-2482.

Saito D, RT Leonardo, JLM Rodrigues, SM Tsai, JF Hofling, RB Gonçalves. 2006. Identification of endodontic infections by sequence analysis of the 16S rDNA clone libraries. J. Medical Microbiol. 55:101-107.

Denef VJ, JA Klappenbach, MA Patrauchan, C Florizone, JLM Rodrigues, TV Tsoi, W Vestraete, LD Eltis, JM Tiedje. 2006. Genetic and genomic insights into the role of benzoate-catabolic pathway redundancy in Burkholderia xenovorans LB400. Appl. Environ. Microbiol. 72:585-595.

 Fedatto LM, ME Silva-Stenico, FTH Pacheco, JLM Rodrigues, SM Tsai. 2006. Detection and characterization of a protease secreted by the plant pathogen Xylella fastidiosa. Microbiol. Res. 161:263-272.

Rodrigues JLM, ME Silva-Stenico, AN de Souza, JRS Lopes, SM Tsai. 2005. In situ probing of Xylella fastidiosa in honeydew of a xylem sap-feeding insect using 16S rRNA-targeted fluorescent oligonucleotides. Environ. Microbiol. 8:747-754.

Fiore MF, BA Neilan, JN Copp, JLM Rodrigues, SM Tsai, H Lee, JT Trevors. 2005. Characterization of nitrogen-fixing cyanobacteria in the Brazilian Amazon floodplain. Water Res. 39:5017-5026.

Silva_Stenico ME, FTH Pacheco, E Carilho, JLM Rodrigues, SM Tsai. 2005. Growth and siderophore production of Xylella fastidiosa under iron-limited conditions. Microbiol. Res. 160:429-436.

Tiedje JM, TV Tsoi, KD Pennel, LD Hansen, A Wani, JLM Rodrigues, Y Hrywna, DP Howell. 2005. Enhancing PCB Bioremediation. p.147-214.In Bioremediation of Recalcitrant Compounds. CRC, Boca Raton, FL.

Rodrigues JLM, ME Silva-Stenico, JE Gomes, JRS Lopes, SM Tsai. 2003. Diversity and detection assessment of Xylella fastidiosa through 16S rRNA and gyrB sequences in field-collected plant and insect samples. Appl. Environ. Microbiol. 69:4249-4255.

Denef VJ, J Park, JLM Rodrigues, TV Tsoi, SA Hashshan, JM Tiedje. 2003. Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities. Environ. Microbiol. 5:933-943.

Rodrigues JLM, MR Aiello, JW Urbance, TV Tsoi, JM Tiedje. 2002. Use of both 16S rRNA and engineered functional genes with real time PCR to quantify an engineered, PCB-degrading Rhodococcus in soil. J. Microbiol. Methods 51:181-189.

Rodrigues JLM, O Maltseva, TV Tsoi, R Helton, JF Quensen III, M Fukuda, JM Tiedje. 2001. Development of a Rhodococcus recombinant strain for degradation of products from anaerobic dechlorination of Aroclor 1242. Environ. Sci. & Techn. 35:663-668.

Rodrigues JLM, M Melotto, JTA Oliveira, JAG da Silveira. 1998. Efficiency of soybean nodules in relation to nodulin activities and hydrogenase expression. Brazilian J. Plant Physiol. 10:173-178.

Rodrigues JLM, M Melotto, and JAG da Silveira. 1998. Nodulin activies, hydrogenase expression and nitrogen fixation in cowpea inoculated with Hup+ and Hup- symbionts. Brazilian J. Plant Physiol. 10:85-90.

Silveira, JAG, JL Contado, JLM Rodrigues, JTA Oliveira. 1998. Phosphoenolpyruvate carboxylase and glutamine synthetase activities in relation to nitrogen fixation in cowpea nodules. Brazilian J. Plant Physiol. 10:19-23.

Rodrigues JLM and Pellizari, VH 1997. Biodegradation of PCBs. In Melo, I.S. de & Azevedo, J.L. de. Microbiologia Ambiental. EMBRAPA. Jaguariuna, SP. 438p.

Rodrigues JLM 1993. PEP carboxylase and glutamine synthatase nodulins: their relationship with symbiotic N2 fixation efficiency in cowpea and soybean inoculated with Bradyrhizobium japonicum. M.Sc. Thesis. University of São Paulo.

Machado, EC, JAG da Silveira, VA Vitorello, JLM Rodrigues. 1992. Photosynthesis, reserves remobilization and grain growth of two maize hybrids submitted to water stress during the grain filling stage. Bragantia. 51:151-159.